Click on the topic-links below to open the documents containing the handouts for the listed topic. You may need a password to open some of the documents. Contact me if you need to know the password. The links will become ALIVE a few days before the scheduled lab.
Please note that the links below might not be in the same order as the lab experiments are scheduled. Please look at the syllabus for correct sequence of experiments.
# |
Topic |
| 1. | Laboratory Syllabus and Schedule of Experiments |
| 2. | Introduction to Bioinformatics, non-commercial and commercial Bioinformatics Resources. |
| 3. | Introduction to NCBI-Entrez System: GenBank, RefSeq, Protein and PubMed databases |
| 4. | Exploration of Genomic Information: Entrez Gene, Human Ensembl, MGD, GDB, and Gene Ontology databases. |
| 5. | Analysis of Genomic Variations and Regulated Gene Expression: SNP, OMIM, HGMD, ASD and EPD databases. |
| 6. | Information Retrieval and Analysis of Proteins: UniProt, PMD, Pfam, Prodom and Conserved Domains databases. |
| 7. | Self Study: Vector NTI Advance (Informax) package. |
| 8. | Sequence comparisons: Global and Local Alignments, Multiple Sequence Alignments and Database Searching |
| 9. | Protein Structure/Function Predictions: Secondary Structure and Hydrophobicity and Functional Domains |
| 10. | Proteomics Tools, Protein Sorting and cellular localization prediction |
| 11. | Protein Structure Analysis: Structure Databases |
| 12. | Self Study: Vector NTI Advance (Informax) package. |
| 13. | Mapping phylogenetic relationships |
| 14. | Gene Identification Methods |
| How to use UNIX | Vector NTI Tutorials and Docs | Sequence Analysis . . |
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