Jessica Walter |
Paramjeet S. Bagga, Ph.D. |
| 3D-Doc Suite
This Suite of tools contains: FTDock, RPScore and MultiDock. FTDock ( Fourier Transform Dock ) performs rigid-body docking on two biomolecules in order to predict their correct binding geometry. FTDock outputs multiple predictions that can be screened using biochemical information. FTDock implements the Fourier correlation algorithm of Katchalski-Katzir and coworkers plus an electrostatics function amenable to Fourier correlation. RPScore ( Residue level Pair potential Score ) uses a single distance constraint empiricaly derived pair potential to screen the ouptut from FTDock. It has been shown that this can reduce dramatically the list of possible complexes within which can be found a correct solution. This program is fully integrated with the present version of FTDock. A further improvement in the quality of the predictions can be gained by using MultiDock (Multiple copy side-chain refinement Dock ). |
| A Collection of Protocols for Protein Mass Spectrometry |
| A
Gallery of Sequence Logos
A graphic representation of a set of binding sites. Logos displays frequencies of bases at each position along with a degree of conversation, measured in bits of information. |
| Abbreviations
of Chemical Compounds
Abbreviated chemical compounds are searched. |
| Amino
Acid Properties
Structural and chemical properties of amino acids. |
| Aspergillus
Web Site
This site is designed to provide information on pathogenic Aspergilli for clinicians and scientific researchers. The site includes DNA sequence data, a comprehensive bibliographic database, laboratory protocols, treatment information and discussion groups. |
| AutoDock
A suite of automated docking tools. It is designed to predict how small molecules, such as substrates or drug candidates, bind to a receptor of known 3D structure. |
| Biofind
Biofind is the Internet's "one-stop-shop" for world wide Biotechnology industry information, gossip and news. |
| BioImage
The aim is to provide the general scientific community with a flexible and searchable database of multi-dimensional biological images. |
| Bioinformatics Links Directory
Features curated links to molecular resources, tools and databases. All of the resources are well tested and are either free or available for a nominal fee. The links listed in this directory are selected on the basis of recommendations from bioinformatics experts in the field. All links contained in the NAR Webserver issue since 2003 are also listed. |
| Bioinformatics: Sequence and Genome Analysis
Website for a book on Bioinformatics, published by Cold Spring Harbor laboratory Press. |
| BioView
The Web’s premier site for biopharmaceutical jobs, news, information and resources. |
| DNA2Z.com
Contains a program for sending an encrypted DNA-o-gram, information about DNA based computers, general information about DNA and its applications. |
| DrugBank
A unique bioinformatics and cheminformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, pathway) information. |
| Folding@Home Distributed Computing
A distributed computing project which studies protein folding, misfolding, aggregation, and related diseases. The project uses novel computational methods and large scale distributed computing, to simulate timescales thousands to millions of times longer than previously achieved. |
| GeneClinics
GeneClinics is a medical knowledge base relating genetic testing to the diagnosis, management, and genetic counseling of individuals and families with specific inherited disorders. |
| NCBI Tools for Software Developers at IEB
The Information Engineering Branch (IEB) is responsible for designing and building NCBI's production software and databases.These resources constitute the bulk of what is seen on NCBI's Web pages. Meant primarily for software developers or other interested groups. |
| NCBI Tools for Software Developers
The NCBI ToolBox consists of three major parts:
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| SHUFFLE
This program, given a sequence of symbols, generates a new version of it consisting of the same symbols but in a randomized order. |
| The
AIDS Knowledge Base
This HIV InSite World Wide Web edition of The AIDS Knowledge Base is intended to be a current, comprehensive reference for state of knowledge about HIV disease in adults. Internal links to the titles and/or abstracts of most available cited references are provided in the text of each chapter. |
| MetaCyc:
Metabolic enCyclopedia
MetaCyc contains the E. coli pathways of EcoCyc, plus additional pathways that have been gathered from a variety of literature and on-line sources, with citations to the source of each pathway. |
| NCBI_BANKIT
DNA/RNA sequence submissions to GenBank. |
| Nomenclature
of Carbohydrates
IUPAC nomenclature of carbohydrates. |
| Official
Website of Nobel Foundation
One central task of the Foundation is to manage the assets made available through the will for awarding prizes in physics, chemistry, physiology or medicine, literature and peace. |
| SWISS-PROT
Lists of E.coli entries
This documents lists all the Escherichia coli K12 chromosomal entries present in this release of SWISS-PROT and list the accession number of their corresponding genes in the EcoGene section of the EcoSeq/EcoMap integrated Escherichia coli database. |
| Symbiosis
Inc.
Provides and maintains the most comprehensive cost effective career service available within the Pharmaceutical, Biotechnology and Medical Device Sectors, promoting a symbiotic environment in which all parties benefit. |
| The
BioNetbook Guide
The BioNetbook is a database of Web pages regarding biology (a web biology notebook). You may search by topics in a classified listing or do a word search, or combine word and topic searches or search in site directory. |
|
The Molecular Biology Database Collection of NAR (Nucleic Acids Research) |
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