Paramjeet S. Bagga, Ph.D. |
| ARED
Human AU-Rich Element (ARE) containing mRNA database. |
| Codon
Usage Database
An extended WWW version of CUTG (Codon Usage Tabulated from GenBank). The frequency of codon use in each organism is made searchable through this World Wide Web site. |
| CODONTREE
A database that is able to determine the codon usage table for a set of protein coding genes; gene relationships on the basis of codon usage similarity; and compositional features of protein coding genes. |
| DrugBank
A unique bioinformatics and cheminformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, pathway) information. |
| GRSDB
A database of quadruplex forming G-rich sequences in alternatively processed mammalian pre-mRNA sequences. |
| EPD:
Eukaryotic Promoter Database
An annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally. |
| ExPASy_ENZYME
A repository of information relative to the nomenclature of enzymes. |
| HGMD
Human gene mutation database at the Institute of medical genetics in Cardiff. Represents an attempt to collate known (published) gene lesions responsible for human inherited disease. |
| HIV
Sequence Database
The HIV Sequence Database focuses on five primary goals: collecting HIV and SIV sequence data, curating and annotating this data, computer analysis of HIV and related sequences, production of software for the analysis of (sequence) data, publication of the data and analyses on this site and in a yearly printed publication, the HIV sequence Compendium. |
| IMGT:
ImmunoGeneTics
A high-quality integrated database specializing in Immunoglobulins (Ig), T cell receptors (TcR) and Major Histocompatibility Complex (MHC) molecules of all vertebrate species. At present, IMGT includes two databases: IMGT/LIGM-DB, a comprehensive database of Ig and TcR from human and other vertebrates, with translation for fully annotated sequences, and IMGT/HLA-DB, a database of the human MHC referred to as HLA (Human Leukocyte Antigens). The IMGT server provides a common access to all ImMunoGeneTics data. |
| IRESite
The database of experimentally verified IRES (Internal Ribosome Entry Site) structures. |
| MGI:
Mouse Genome Informatics
The MGI resource comprises the Mouse Genome Database (MGD), the Gene Expression Database (GXD) and related resources including the Mouse Tumor Biology database, the Rat Data resource, Michael Festing's Listing of Inbred Strains of Mice and Rats, and MouseBLAST. |
| Molecular
Bioinformatics Of Gene Regulation
The focus of this project is regulatory genomic signals and regions, in particular those that govern transcriptional control. The basis of this work is the TRANSFAC database. It compiles data about gene regulatory DNA sequences and protein factors binding to and acting through them. |
| Pedb:
Prostate Expression Database
A curated relational database and suite of analysis tools designed for the study of prostate gene expression in normal and disease states. Expressed Sequence Tags (ESTs) and full-length cDNA sequences derived from more than 40 human prostate cDNA libraries are maintained and represent a wide spectrum of normal and pathological conditions. The database provides search options for nucleotide and protein queries to PEDB using BLAST/FASTA; an interface with other on-line sequence repositories and sequence analysis tools. |
| PhosphoBase
A database of phosphorylation sites in proteins. |
| REBASE:
The Restriction Enzyme Database
A collection of information about restriction enzymes, methylases, the microorganisms from which they have been isolated, recognition sequences, cleavage sites, methylation specificity, the commercial availability of the enzymes, and references - both published and unpublished observations (dating back to 1952). Updated daily. |
| RNA
Editing Web Site
This is a site for dissemination of information on all the various types of RNA editing. |
| SRPD:
Signal Recognition Particle Database
The SRPDB assists the study of the structure and function of signal recognition particle (SRP). It provides annotated SRP RNA sequences from eukaryotes and archaea, phylogenetically ordered and aligned with their bacterial equivalents. |
| TelDB
A telomere information center supported by NIH. Telomere literature references are accessible through a searchable Telomere Literature Database. |
| The
AIDS Knowledge Base
This HIV InSite World Wide Web edition of The AIDS Knowledge Base is intended to be a current, comprehensive reference for state of knowledge about HIV disease in adults. Internal links to the titles and/or abstracts of most available cited references are provided in the text of each chapter. |
|
The Molecular Biology Database Collection of NAR (Nucleic Acids Research) |
| TmRNA
This website is a non-redundant database of tmRNA sequences. The bacterial tmRNA (also known as 10Sa RNA) is so-named for its dual tRNA-like and mRNA-like nature. It is employed in a remarkable trans-translation process to add a C-terminal peptide tag to the incomplete protein product of a broken mRNA. The tmRNA-directed tag targets the abnormal protein for proteolysis. |
| TRADAT:
TRAnscription Databases and Analysis Tools
Databases that collect experimental relevant data such as TRANSFAC and EPD provide the basis for sequence analysis. |
| TransTerm:
The Translational Signal Database
A database of sequence contexts about the stop and start codons of many species found in GenBank. TransTerm also contains codon usage data for these same species and summary statistics for the sequences analyzed. The 3' and 5' UTR flanking sequences and coding sequences for each organism are also available for searching via the experimental server. |
| UTRdb
A curated database of 5' and 3' untranslated regions of eukaryotic mRNAs. |
| Vector
db
This database contains annotations and sequence information for many vectors commonly used in molecular biology. Information for more than 2600 vectors is available with search facilities. |
| Back to the Top | Bioinformatics Resources Home | Contact me |