Paramjeet S. Bagga,  Ph.D.

Structural Databases

NUCLEIC ACIDS

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BMRB: BioMagResBank
A repository for data from NMR spectroscopy on proteins, peptides, and nucleic acids.
ExPASy_SWISS-3DIMAGE
An image database, which strives to provide high quality pictures of biological macromolecules with known three-dimensional structure.
lsu rRNA Database
A database on the structure of lsu ribosomal subunit RNA (further abbreviated as lsu rRNA). This database includes indications of secondary structure elements for each sequence, based on the adopted rRNA secondary structure, which in turn is corroborated by the observation of compensating substitutions in the alignment.
NDB: Nucleic Acid Database
The goal of the NDB is to assemble and distribute structural information about nucleic acids.
ssu rRNA Database
A database on the structure of ssu ribosomal subunit RNA (fssu rRNA). This database includes indications of secondary structure elements for each sequence, based on the adopted rRNA secondary structure, which in turn is corroborated by the observation of compensating substitutions in the alignment.

The Molecular Biology Database Collection of NAR (Nucleic Acids Research)
The Nucleic Acids Research Molecular Biology Database Collection is a public online resource that lists the databases described in the issues of Nucleic Acids Research together with other databases of value to the biologist and available throughout the world. All databases included in this Collection are freely available to the public.

TmRDB
TThe tmRDB studies the structures and functions of the tmRNA The tmRDB provides aligned, annotated and phylogenetically ordered tmRNA sequences. The alignments of the sequences represent conserved secondary structure elements where each base pair is proven by comparative sequence analysis. Where possible, direct links to primary sources are established
uRNADB
The uRNADB studies the structures and functions of various uRNAs. It provides aligned, annotated and phylogenetically ordered sequences. The alignments of the sequences represent conserved secondary structure elements where each base pair is proven by comparative sequence analysis. Where possible, established direct links to GenBank via the accession number.
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