Jessica Walter |
Paramjeet S. Bagga, Ph.D. |
| COGs:
Clusters of Orthologous Groups of Proteins
COGs were delineated by comparing protein sequences encoded in 21 complete genomes, representing 17 major phylogenetic lineages. Each COG consists of individual proteins or groups of paralogs from at least 3 lineages and thus corresponds to an ancient conserved domain. |
| Genetic
Code Viewer
Genetic Code Viewer is a simple tool for showing different versions of genetic code used by various taxonomic groups. |
| ICB:
Identification And Classificatiion Of Bacteria
The database and related tools are provided to make identification and classification of bacteria that you have isolated from various natural sources easier and more reliable by performing comparative analysis of your gyrB and/or rpoD sequence data against the nucleotide/derived amino acid sequences from a large number of organisms stored in the database. |
| List
Of Bacterial Names With Standing In Nomenclature
This list includes, alphabetically and chronologically, the nomenclature of bacteria and the nomenclatural changes as cited in the Approved Lists of Bacterial Names. |
| NCBI
Taxonomy
The NCBI taxonomy database contains the names of all organisms that are represented in the genetic databases with at least one nucleotide or protein sequence. |
| RDP:
Ribosomal Database Project II
Provides ribosome related data services, including online data analysis, rRNA derived phylogenetic trees, and aligned and annotated rRNA sequences. |
| ROSE:
Random-model Of Sequence Evolution
ROSE implements a new probabilistic model of the evolution of RNA, DNA, or protein-like sequences. The model also allows for varying rates of mutation within the sequences, making it possible to establish so-called sequence motifs. The data created by Rose are suitable for the evaluation of methods in multiple sequence alignment computation and the prediction of phylogenetic relationships. |
| SCOP:
Structural Classification of Proteins
A database that aims to provide a detailed and comprehensive description of the structural and evolutionary relationships between all proteins whose structure is known, including all entries in PDB. |
| Taxonomy
– Genetic Codes
A list of genetic codes used by various taxonomic groups. |
| TmRDB
The tmRDB studies the structures and functions of the tmRNA. The tmRDB provides aligned, annotated and phylogenetically ordered tmRNA sequences. The alignments of the sequences represent conserved secondary structure elements where each base pair is proven by comparative sequence analysis. Where possible, direct links to primary sources are established. |
| TREE
of LIFE
The Tree of Life is a project containing information about the diversity of organisms on Earth, their history, and characteristics. The information is linked together in the form of the evolutionary tree that connects all organisms to each other. |
| TREEBASE
TreeBASE is a relational database of phylogenetic information which stores phylogenetic trees and the data matrices used to generate them from published research papers. TreeBASE accepts all types of phylogenetic data (e.g., trees of species, trees of populations, trees of genes) representing all biotic taxa. |
| URNADB
The uRNADB studies the structures and functions of various uRNAs. It provides aligned, annotated and phylogenetically ordered sequences. The alignments of the sequences represent conserved secondary structure elements where each base pair is proven by comparative sequence analysis. Where possible, established direct links to GenBank via the accession number. |
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